MolNFT v1 · #454659 · protein
AlphaFold monomer V2.0 prediction for threonine--tRNA ligase (Q8NW68)
Q8NW68: “AlphaFold monomer V2.0 prediction for threonine--tRNA ligase (Q8NW68)”. 6 pockets (best druggability 0.72). MolNFT v1 #454659 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q8NW68
- Type
- protein
- Length
- 645 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa73BAb1DabE4333A884D03393eAa10c3B4215494
- Molecule
- Threonine--tRNA ligase
- UniProt
- Q8NW68
- Pockets
- 6 · best druggability 0.72
Structure
1 distinct chain · 38% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Threonine--tRNA ligase | protein | 645 | 38% helix, 28% strand | Q8NW68 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 467 | 0.72 | 0.82 | 41 | empty |
| 2 | 211 | 0.49 | 0.75 | 34 | empty |
| 3 | 108 | 0.43 | 0.77 | 20 | empty |
| 4 | 151 | 0.43 | 0.74 | 20 | empty |
| 5 | 67 | 0.36 | 0.77 | 14 | empty |
Compared structures
- 1NYQ · Structure of staphylococcus aureus threonyl-tRNA synthetase complexed with an analogue of… · an experimental structure of the same protein · chain A against B, TM-score 0.93
- 1NYQ · Structure of Staphylococcus aureus threonyl-tRNA synthetase complexed with an analogue of… · an experimental structure of the same protein · chain A against B, TM-score 0.93
- 1NYR · Structure of staphylococcus aureus threonyl-tRNA synthetase complexed with ATP · an experimental structure of the same protein · chain A against B, TM-score 0.91
- 1NYR · Structure of Staphylococcus aureus threonyl-tRNA synthetase complexed with ATP · an experimental structure of the same protein · chain A against B, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NW68
- Elsewhere: UniProt Q8NW68 · AlphaFold DB Q8NW68
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