MolNFT v1 · #453751 · protein
AlphaFold monomer V2.0 prediction for serine--tRNA ligase (O58441)
O58441: “AlphaFold monomer V2.0 prediction for serine--tRNA ligase (O58441)”. 3 pockets (best druggability 0.73). MolNFT v1 #453751 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- O58441
- Type
- protein
- Length
- 455 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9188600a0FCa2914254C94299b1bd9721Bc4D500
- Molecule
- Serine--tRNA ligase
- UniProt
- O58441
- Pockets
- 3 · best druggability 0.73
Structure
1 distinct chain · 47% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Serine--tRNA ligase | protein | 455 | 47% helix, 21% strand | O58441 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 675 | 0.73 | 0.80 | 56 | empty |
| 2 | 103 | 0.37 | 0.74 | 17 | empty |
| 3 | 63 | 0.32 | 0.75 | 14 | empty |
Compared structures
- 2ZR3 · Crystal structure of seryl-tRNA synthetase from Pyrococcus horikoshii · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 2ZR3 · Crystal structure of seryl-tRNA synthetase from pyrococcus horikoshii · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 2DQ0 · Crystal structure of seryl-tRNA synthetase from Pyrococcus horikoshii complexed with a… · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 2DQ0 · Crystal structure of seryl-tRNA synthetase from pyrococcus horikoshii complexed with a… · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 2ZR2 · Crystal structure of seryl-tRNA synthetase from Pyrococcus horikoshii complexed with ATP · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 2ZR2 · Crystal structure of seryl-tRNA synthetase from pyrococcus horikoshii complexed with ATP · an experimental structure of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O58441
- Elsewhere: UniProt O58441 · AlphaFold DB O58441
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