MolNFT v1 · #452410 · protein
AlphaFold monomer V2.0 prediction for glutamine--tRNA ligase (P13188)
P13188: “AlphaFold monomer V2.0 prediction for glutamine--tRNA ligase (P13188)”. 5 pockets (best druggability 0.67). MolNFT v1 #452410 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P13188
- Type
- protein
- Length
- 809 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xDc7b11bC19E7871dc4cc7f885eEd3e0D4eBdc448
- Molecule
- Glutamine--tRNA ligase
- UniProt
- P13188
- Pockets
- 5 · best druggability 0.67
Structure
1 distinct chain · 39% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glutamine--tRNA ligase | protein | 809 | 39% helix, 18% strand | P13188 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 373 | 0.67 | 0.80 | 39 | empty |
| 2 | 278 | 0.61 | 0.80 | 44 | empty |
| 3 | 106 | 0.46 | 0.79 | 15 | empty |
| 4 | 93 | 0.38 | 0.76 | 15 | empty |
| 5 | 50 | 0.28 | 0.75 | 13 | empty |
Compared structures
- 4H3S · The Structure of Glutaminyl-tRNA Synthetase from Saccharomyces Cerevisiae · an experimental structure of the same protein · chain A against A, TM-score 0.71
- 4H3S · The structure of glutaminyl-tRNA synthetase from saccharomyces cerevisiae · an experimental structure of the same protein · chain A against A, TM-score 0.71
- 3TL4 · Crystal Structure of the tRNA Binding Domain of Glutaminyl-tRNA Synthetase from… · an experimental structure of the same protein · chain A against X, TM-score 0.22
- 3TL4 · Crystal structure of the tRNA binding domain of glutaminyl-tRNA synthetase from… · an experimental structure of the same protein · chain A against X, TM-score 0.22
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P13188
- Elsewhere: UniProt P13188 · AlphaFold DB P13188
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