MolNFT v1 · #452139 · protein
AlphaFold monomer V2.0 prediction for proline--tRNA ligase (P0DG54)
P0DG54: “AlphaFold monomer V2.0 prediction for proline--tRNA ligase (P0DG54)”. 5 pockets (best druggability 0.71). MolNFT v1 #452139 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P0DG54
- Type
- protein
- Length
- 618 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xeF890c906081dACC6118015C44e06276C1867C34
- Molecule
- Proline--tRNA ligase
- UniProt
- P0DG54
- Pockets
- 5 · best druggability 0.71
Structure
1 distinct chain · 31% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Proline--tRNA ligase | protein | 618 | 31% helix, 30% strand | P0DG54 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 579 | 0.71 | 0.80 | 63 | empty |
| 2 | 248 | 0.53 | 0.76 | 35 | empty |
| 3 | 115 | 0.49 | 0.80 | 24 | empty |
| 4 | 160 | 0.45 | 0.76 | 22 | empty |
| 5 | 50 | 0.24 | 0.72 | 15 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DG54
- Elsewhere: UniProt P0DG54 · AlphaFold DB P0DG54
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