MolNFT v1 · #451865 · protein

AlphaFold monomer V2.0 prediction for proline--tRNA ligase (Q58635)

Q58635: “AlphaFold monomer V2.0 prediction for proline--tRNA ligase (Q58635)”. 4 pockets (best druggability 0.72). MolNFT v1 #451865 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: Q58635
Type: protein
Length: 455 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x2286c6C31A3636A92d0a0BE4443E4A3e89CDa574
Molecule: Proline--tRNA ligase
UniProt: Q58635
Pockets: 4 · best druggability 0.72

Structure

1 distinct chain · 39% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Proline--tRNA ligase	protein	455	39% helix, 31% strand	Q58635

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	485	0.72	0.82	42	empty
2	82	0.33	0.74	16	empty
3	54	0.28	0.74	13	empty
4	52	0.26	0.73	11	empty

Compared structures

1NJ8 · Crystal Structure of Prolyl-tRNA Synthetase from Methanocaldococcus janaschii · an experimental structure of the same protein · chain A against A, TM-score 0.99
1NJ8 · Crystal structure of prolyl-tRNA synthetase from methanocaldococcus janaschii · an experimental structure of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q58635
Elsewhere: UniProt Q58635 · AlphaFold DB Q58635

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