MolNFT v1 · #433793 · protein
AlphaFold monomer V2.0 prediction for adomet-dependent rRNA methyltransferase SPB1 (O42832)
O42832: “AlphaFold monomer V2.0 prediction for adomet-dependent rRNA methyltransferase SPB1 (O42832)”. 4 pockets (best druggability 0.53). MolNFT v1 #433793 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- O42832
- Type
- protein
- Length
- 802 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xf88639F39897A14ECa4265D0fB4FCb398Ce014ee
- Molecule
- Adomet-dependent rRNA methyltransferase SPB1
- UniProt
- O42832
- Pockets
- 4 · best druggability 0.53
Structure
1 distinct chain · 44% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Adomet-dependent rRNA methyltransferase SPB1 | protein | 802 | 44% helix, 8% strand | O42832 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 322 | 0.53 | 0.74 | 32 | empty |
| 2 | 210 | 0.47 | 0.74 | 34 | empty |
| 3 | 79 | 0.34 | 0.75 | 19 | empty |
| 4 | 105 | 0.33 | 0.73 | 18 | empty |
Compared structures
- 8ESQ · Ytm1 associated nascent 60S ribosome State 2 · an experimental structure of the same protein · chain A against w, TM-score 0.39
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O42832
- Elsewhere: UniProt O42832 · AlphaFold DB O42832
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