MolNFT v1 · #430996 · protein
AlphaFold monomer V2.0 prediction for sphingomyelinase D (J3K844)
J3K844: “AlphaFold monomer V2.0 prediction for sphingomyelinase D (J3K844)”. 3 pockets (best druggability 0.50). MolNFT v1 #430996 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- J3K844
- Type
- protein
- Length
- 303 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x40B9C9d5F084D34d026E9d5Dd10501AcdF6d6152
- Molecule
- Sphingomyelinase D
- UniProt
- J3K844
- Pockets
- 3 · best druggability 0.50
Structure
1 distinct chain · 33% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sphingomyelinase D | protein | 303 | 33% helix, 19% strand | J3K844 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 85 | 0.50 | 0.83 | 20 | empty |
| 2 | 121 | 0.39 | 0.75 | 19 | empty |
| 3 | 70 | 0.28 | 0.72 | 21 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt J3K844
- Elsewhere: UniProt J3K844 · AlphaFold DB J3K844
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