MolNFT v1 · #422527 · protein
AlphaFold monomer V2.0 prediction for protein SDA1 (P53313)
P53313: “AlphaFold monomer V2.0 prediction for protein SDA1 (P53313)”. 6 pockets (best druggability 0.67). MolNFT v1 #422527 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P53313
- Type
- protein
- Length
- 767 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9188600a0FCa2914254C94299b1bd9721Bc4D500
- Molecule
- Protein SDA1
- UniProt
- P53313
- Pockets
- 6 · best druggability 0.67
Structure
1 distinct chain · 61% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein SDA1 | protein | 767 | 61% helix, 0% strand | P53313 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 853 | 0.67 | 0.74 | 82 | empty |
| 2 | 573 | 0.65 | 0.76 | 52 | empty |
| 3 | 190 | 0.50 | 0.76 | 26 | empty |
| 4 | 214 | 0.45 | 0.73 | 32 | empty |
| 5 | 112 | 0.41 | 0.76 | 23 | empty |
Compared structures
- 6YLG · Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement) · an experimental structure of the same protein · chain A against t, TM-score 0.51
- 6YLH · Rix1-Rea1 pre-60S particle - full composite structure · an experimental structure of the same protein · chain A against t, TM-score 0.51
- 5JCS · Cryo-EM structure of the RIX1-REA1 pre-60S particle · an experimental structure of the same protein · chain A against r, TM-score 0.25
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P53313
- Elsewhere: UniProt P53313 · AlphaFold DB P53313
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