MolNFT v1 · #421542 · protein
AlphaFold monomer V2.0 prediction for sodium channel protein type 10 subunit alpha (P0DMA5)
P0DMA5: “AlphaFold monomer V2.0 prediction for sodium channel protein type 10 subunit alpha (P0DMA5)”. 20 pockets (best druggability 0.85). MolNFT v1 #421542 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P0DMA5
- Type
- protein
- Length
- 1,959 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x025f3b1a898b05AD2731bE6Ab72687b5920c4A3F
- Molecule
- Sodium channel protein type 10 subunit alpha
- UniProt
- P0DMA5
- Pockets
- 20 · best druggability 0.85
Structure
1 distinct chain · 54% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sodium channel protein type 10 subunit alpha | protein | 1959 | 54% helix, 3% strand | P0DMA5 |
Pockets
20 pockets found on a 1 Å grid, 17 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1138 | 0.85 | 0.85 | 83 | empty |
| 2 | 739 | 0.76 | 0.80 | 75 | empty |
| 3 | 734 | 0.73 | 0.79 | 61 | empty |
| 4 | 555 | 0.71 | 0.80 | 44 | empty |
| 5 | 656 | 0.71 | 0.78 | 58 | empty |
Modifications
Observed in the structure: 6 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DMA5
- Elsewhere: UniProt P0DMA5 · AlphaFold DB P0DMA5
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