MolNFT v1 · #388826 · protein
AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (D5AQI9)
D5AQI9: “AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (D5AQI9)”. 7 pockets (best druggability 0.75). MolNFT v1 #388826 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- D5AQI9
- Type
- protein
- Length
- 674 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7a1388B6Aad67B04634A32f63b8A6D6005eab86c
- Molecule
- RNA polymerase sigma factor rpod
- UniProt
- D5AQI9
- Pockets
- 7 · best druggability 0.75
Structure
1 distinct chain · 64% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor rpod | protein | 674 | 64% helix, 2% strand | D5AQI9 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 540 | 0.75 | 0.82 | 50 | empty |
| 2 | 717 | 0.71 | 0.78 | 56 | empty |
| 3 | 206 | 0.46 | 0.74 | 23 | empty |
| 4 | 101 | 0.40 | 0.77 | 22 | empty |
| 5 | 55 | 0.39 | 0.81 | 12 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D5AQI9
- Elsewhere: UniProt D5AQI9 · AlphaFold DB D5AQI9
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