MolNFT v1 · #388822 · protein
AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P52327)
P52327: “AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P52327)”. 7 pockets (best druggability 0.75). MolNFT v1 #388822 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P52327
- Type
- protein
- Length
- 614 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xE98bd0722a8eEb0377b675F85e9ceBC2DbC988D6
- Molecule
- RNA polymerase sigma factor rpod
- UniProt
- P52327
- Pockets
- 7 · best druggability 0.75
Structure
1 distinct chain · 61% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor rpod | protein | 614 | 61% helix, 2% strand | P52327 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1194 | 0.75 | 0.77 | 93 | empty |
| 2 | 501 | 0.63 | 0.76 | 39 | empty |
| 3 | 75 | 0.53 | 0.86 | 21 | empty |
| 4 | 98 | 0.44 | 0.78 | 14 | empty |
| 5 | 63 | 0.37 | 0.78 | 9 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P52327
- Elsewhere: UniProt P52327 · AlphaFold DB P52327
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