MolNFT v1 · #384936 · protein
AlphaFold monomer V2.0 prediction for RNA polymerase II-associated protein 1 (Q3T1I9)
Q3T1I9: “AlphaFold monomer V2.0 prediction for RNA polymerase II-associated protein 1 (Q3T1I9)”. 16 pockets (best druggability 0.77). MolNFT v1 #384936 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q3T1I9
- Type
- protein
- Length
- 1,400 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xBF0D2e107Ce1EcD2C4369B042274201DB719AaAF
- Molecule
- RNA polymerase II-associated protein 1
- UniProt
- Q3T1I9
- Pockets
- 16 · best druggability 0.77
Structure
1 distinct chain · 52% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase II-associated protein 1 | protein | 1400 | 52% helix, 1% strand | Q3T1I9 |
Pockets
16 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 640 | 0.77 | 0.82 | 79 | empty |
| 2 | 1110 | 0.74 | 0.77 | 86 | empty |
| 3 | 542 | 0.65 | 0.76 | 39 | empty |
| 4 | 50 | 0.62 | 0.94 | 19 | empty |
| 5 | 193 | 0.60 | 0.82 | 35 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3T1I9
- Elsewhere: UniProt Q3T1I9 · AlphaFold DB Q3T1I9
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