MolNFT v1 · #376327 · protein

AlphaFold monomer V2.0 prediction for 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd (A9KYI1)

A9KYI1: “AlphaFold monomer V2.0 prediction for 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd (A9KYI1)”. 4 pockets (best druggability 0.65). MolNFT v1 #376327 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: A9KYI1
Type: protein
Length: 450 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xd1A2963012bEcbC7A8f505464439Ab678C48936f
Molecule: 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd
UniProt: A9KYI1
Pockets: 4 · best druggability 0.65

Structure

1 distinct chain · 24% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd	protein	450	24% helix, 32% strand	A9KYI1

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	426	0.65	0.78	62	empty
2	201	0.46	0.74	31	empty
3	66	0.31	0.75	21	empty
4	54	0.26	0.73	13	empty

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A9KYI1
Elsewhere: UniProt A9KYI1 · AlphaFold DB A9KYI1

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