MolNFT v1 · #376217 · protein
AlphaFold monomer V2.0 prediction for 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd (A0KGG9)
A0KGG9: “AlphaFold monomer V2.0 prediction for 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd (A0KGG9)”. 3 pockets (best druggability 0.68). MolNFT v1 #376217 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- A0KGG9
- Type
- protein
- Length
- 440 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7012c0b45c68a2c067644b9d3e5DDa06892c6957
- Molecule
- 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd
- UniProt
- A0KGG9
- Pockets
- 3 · best druggability 0.68
Structure
1 distinct chain · 25% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd | protein | 440 | 25% helix, 33% strand | A0KGG9 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 578 | 0.68 | 0.77 | 70 | empty |
| 2 | 115 | 0.39 | 0.75 | 19 | empty |
| 3 | 67 | 0.32 | 0.75 | 21 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0KGG9
- Elsewhere: UniProt A0KGG9 · AlphaFold DB A0KGG9
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