MolNFT v1 · #375061 · protein

AlphaFold monomer V2.0 prediction for 60S ribosomal protein L8 (P0DJ52)

P0DJ52: “AlphaFold monomer V2.0 prediction for 60S ribosomal protein L8 (P0DJ52)”. 3 pockets (best druggability 0.31). MolNFT v1 #375061 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: P0DJ52
Type: protein
Length: 264 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x2A761b38A61332c74222D3acB8AE18729942078b
Molecule: 60S ribosomal protein L8
UniProt: P0DJ52
Pockets: 3 · best druggability 0.31

Structure

1 distinct chain · 13% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	60S ribosomal protein L8	protein	264	13% helix, 23% strand	P0DJ52

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	61	0.31	0.75	16	empty
2	55	0.28	0.75	15	empty
3	67	0.27	0.72	16	empty

Compared structures

4V8P · T.thermophila 60S ribosomal subunit in complex with initiation factor 6. · an experimental structure of the same protein · chain A against BA, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0DJ52
Elsewhere: UniProt P0DJ52 · AlphaFold DB P0DJ52

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