MolNFT v1 · #372469 · protein

AlphaFold monomer V2.0 prediction for 60S ribosomal protein L4 (P0DJ55)

P0DJ55: “AlphaFold monomer V2.0 prediction for 60S ribosomal protein L4 (P0DJ55)”. 3 pockets (best druggability 0.35). MolNFT v1 #372469 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: P0DJ55
Type: protein
Length: 410 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x2886b5ab93c6304C231B2E528CB78FB8d5E025Ac
Molecule: 60S ribosomal protein L4
UniProt: P0DJ55
Pockets: 3 · best druggability 0.35

Structure

1 distinct chain · 44% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	60S ribosomal protein L4	protein	410	44% helix, 10% strand	P0DJ55

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	88	0.35	0.74	16	empty
2	57	0.33	0.77	14	empty
3	59	0.26	0.72	16	empty

Compared structures

4V8P · T.thermophila 60S ribosomal subunit in complex with initiation factor 6. · an experimental structure of the same protein · chain A against BC, TM-score 0.87

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0DJ55
Elsewhere: UniProt P0DJ55 · AlphaFold DB P0DJ55

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