MolNFT v1 · #364750 · protein
AlphaFold monomer V2.0 prediction for 50S ribosomal protein L2 (P60405)
P60405: “AlphaFold monomer V2.0 prediction for 50S ribosomal protein L2 (P60405)”. 1 pocket (best druggability 0.53). MolNFT v1 #364750 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P60405
- Type
- protein
- Length
- 276 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x102561E808e785b64B48713C8D8B2D5820380F93
- Molecule
- 50S ribosomal protein L2
- UniProt
- P60405
- Pockets
- 1 · best druggability 0.53
Structure
1 distinct chain · 10% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 50S ribosomal protein L2 | protein | 276 | 10% helix, 29% strand | P60405 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 286 | 0.53 | 0.75 | 33 | empty |
Compared structures
- 6OF6 · Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site · an experimental structure of the same protein · chain A against YD, TM-score 0.99
- 8VTY · Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with… · an experimental structure of the same protein · chain A against 1D, TM-score 0.99
- 7U2I · Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA… · an experimental structure of the same protein · chain A against 2D, TM-score 0.99
- 7U2H · Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA… · an experimental structure of the same protein · chain A against 1D, TM-score 0.99
- 8FC2 · Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y… · an experimental structure of the same protein · chain A against 1D, TM-score 0.99
- 4Z8C · Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor… · an experimental structure of the same protein · chain A against 1D, TM-score 0.99
- 7U2J · Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA… · an experimental structure of the same protein · chain A against 1D, TM-score 0.99
- 8VTW · Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with… · an experimental structure of the same protein · chain A against 1D, TM-score 0.99
- 8FC5 · Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in… · an experimental structure of the same protein · chain A against 1D, TM-score 0.99
- 8UD6 · Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with… · an experimental structure of the same protein · chain A against 1D, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P60405
- Elsewhere: UniProt P60405 · AlphaFold DB P60405
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