MolNFT v1 · #350159 · protein

AlphaFold monomer V2.0 prediction for 60S ribosomal protein L13A (Q9VNE9)

Q9VNE9: “AlphaFold monomer V2.0 prediction for 60S ribosomal protein L13A (Q9VNE9)”. 3 pockets (best druggability 0.43). MolNFT v1 #350159 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: Q9VNE9
Type: protein
Length: 205 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xc663c339B33EBB31b84039575e218358B8FeD238
Molecule: 60S ribosomal protein L13A
UniProt: Q9VNE9
Pockets: 3 · best druggability 0.43

Structure

1 distinct chain · 55% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	60S ribosomal protein L13A	protein	205	55% helix, 10% strand	Q9VNE9

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	117	0.43	0.76	15	empty
2	69	0.36	0.77	12	empty
3	50	0.29	0.75	17	empty

Compared structures

6XU6 · Drosophila melanogaster Testis 80S ribosome · an experimental structure of the same protein · chain A against CO, TM-score 0.95
6XU8 · Drosophila melanogaster Ovary 80S ribosome · an experimental structure of the same protein · chain A against CO, TM-score 0.95
4V6W · Structure of the D. melanogaster 80S ribosome · an experimental structure of the same protein · chain A against CO, TM-score 0.94
6XU7 · Drosophila melanogaster Testis polysome ribosome · an experimental structure of the same protein · chain A against CO, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9VNE9
Elsewhere: UniProt Q9VNE9 · AlphaFold DB Q9VNE9

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