MolNFT v1 · #347850 · protein
AlphaFold monomer V2.0 prediction for 50S ribosomal protein L2, chloroplastic (P06509)
P06509: “AlphaFold monomer V2.0 prediction for 50S ribosomal protein L2, chloroplastic (P06509)”. 3 pockets (best druggability 0.62). MolNFT v1 #347850 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P06509
- Type
- protein
- Length
- 272 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x869cF49c6E985236b321a48Bc767b1Af062c4598
- Molecule
- 50S ribosomal protein L2, chloroplastic
- UniProt
- P06509
- Pockets
- 3 · best druggability 0.62
Structure
1 distinct chain · 8% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 50S ribosomal protein L2, chloroplastic | protein | 272 | 8% helix, 28% strand | P06509 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 412 | 0.62 | 0.76 | 36 | empty |
| 2 | 104 | 0.45 | 0.79 | 22 | empty |
| 3 | 63 | 0.35 | 0.77 | 16 | empty |
Compared structures
- 5MMI · Structure of the large subunit of the chloroplast ribosome · an experimental structure of the same protein · chain A against C, TM-score 0.91
- 5MLC · Cryo-EM structure of the spinach chloroplast ribosome reveals the location of… · an experimental structure of the same protein · chain A against D, TM-score 0.89
- 5MLC · Cryo-EM structure of the spinach chloroplast ribosome reveals the location of… · an experimental structure of the same protein · chain A against D, TM-score 0.89
- 5H1S · Structure of the large subunit of the chloro-ribosome · an experimental structure of the same protein · chain A against E, TM-score 0.88
- 5H1S · Structure of the large subunit of the chloro-ribosome · an experimental structure of the same protein · chain A against E, TM-score 0.88
- 5X8T · Structure of the 50S large subunit of chloroplast ribosome from spinach · an experimental structure of the same protein · chain A against C, TM-score 0.88
- 5X8T · Structure of the 50S large subunit of chloroplast ribosome from spinach · an experimental structure of the same protein · chain A against C, TM-score 0.88
- 4V61 · Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the… · an experimental structure of the same protein · chain A against BE, TM-score 0.86
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06509
- Elsewhere: UniProt P06509 · AlphaFold DB P06509
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