MolNFT v1 · #342642 · protein
AlphaFold monomer V2.0 prediction for probable rhamnogalacturonase B (Q2TWN8)
Q2TWN8: “AlphaFold monomer V2.0 prediction for probable rhamnogalacturonase B (Q2TWN8)”. 5 pockets (best druggability 0.60). MolNFT v1 #342642 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q2TWN8
- Type
- protein
- Length
- 532 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x35612D34a32C306CA4fc1edA9360D1F717e25950
- Molecule
- Probable rhamnogalacturonase B
- UniProt
- Q2TWN8
- Pockets
- 5 · best druggability 0.60
Structure
1 distinct chain · 5% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable rhamnogalacturonase B | protein | 532 | 5% helix, 39% strand | Q2TWN8 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 358 | 0.60 | 0.77 | 41 | empty |
| 2 | 69 | 0.52 | 0.86 | 22 | empty |
| 3 | 179 | 0.47 | 0.76 | 27 | empty |
| 4 | 168 | 0.45 | 0.75 | 27 | empty |
| 5 | 162 | 0.43 | 0.75 | 19 | empty |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2TWN8
- Elsewhere: UniProt Q2TWN8 · AlphaFold DB Q2TWN8
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