MolNFT v1 · #333870 · protein

AlphaFold monomer V2.0 prediction for ribosome-interacting GTPase 1 (P39729)

P39729: “AlphaFold monomer V2.0 prediction for ribosome-interacting GTPase 1 (P39729)”. 7 pockets (best druggability 0.64). MolNFT v1 #333870 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: P39729
Type: protein
Length: 369 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xEFBFDD7c5CFB5252F9d95cDFb437Cf72c1e15430
Molecule: Ribosome-interacting GTPase 1
UniProt: P39729
Pockets: 7 · best druggability 0.64

Structure

1 distinct chain · 36% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ribosome-interacting GTPase 1	protein	369	36% helix, 24% strand	P39729

Pockets

7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	185	0.64	0.84	29	empty
2	121	0.53	0.82	23	empty
3	175	0.53	0.79	26	empty
4	121	0.49	0.80	32	empty
5	60	0.44	0.82	18	empty

Compared structures

4A9A · Structure of RBG1 in complex with TMA46 dfrp domain · an experimental structure of the same protein · chain A against A, TM-score 0.90
4A9A · Structure of Rbg1 in complex with Tma46 dfrp domain · an experimental structure of the same protein · chain A against A, TM-score 0.90

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P39729
Elsewhere: UniProt P39729 · AlphaFold DB P39729

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