MolNFT v1 · #332513 · protein
AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa (B2VGQ6)
B2VGQ6: “AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa (B2VGQ6)”. 9 pockets (best druggability 0.81). MolNFT v1 #332513 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- B2VGQ6
- Type
- protein
- Length
- 968 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x78Cc7f9BF18AF8279e492D45EE7Fe9d7cC6f6D07
- Molecule
- RNA polymerase-associated protein rapa
- UniProt
- B2VGQ6
- Pockets
- 9 · best druggability 0.81
Structure
1 distinct chain · 46% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase-associated protein rapa | protein | 968 | 46% helix, 18% strand | B2VGQ6 |
Pockets
9 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 786 | 0.81 | 0.85 | 93 | empty |
| 2 | 688 | 0.73 | 0.79 | 74 | empty |
| 3 | 536 | 0.67 | 0.78 | 53 | empty |
| 4 | 348 | 0.60 | 0.77 | 43 | empty |
| 5 | 156 | 0.45 | 0.76 | 21 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2VGQ6
- Elsewhere: UniProt B2VGQ6 · AlphaFold DB B2VGQ6
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