MolNFT v1 · #320039 · protein
AlphaFold monomer V2.0 prediction for phosphatidylserine synthase (Q9VPD3)
Q9VPD3: “AlphaFold monomer V2.0 prediction for phosphatidylserine synthase (Q9VPD3)”. 9 pockets (best druggability 0.73). MolNFT v1 #320039 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q9VPD3
- Type
- protein
- Length
- 498 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xA9d9b018480d49829741EC0796922C2C1c781850
- Molecule
- Phosphatidylserine synthase
- UniProt
- Q9VPD3
- Pockets
- 9 · best druggability 0.73
Structure
1 distinct chain · 61% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphatidylserine synthase | protein | 498 | 61% helix, 0% strand | Q9VPD3 |
Pockets
9 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 490 | 0.73 | 0.82 | 48 | empty |
| 2 | 433 | 0.68 | 0.79 | 31 | empty |
| 3 | 254 | 0.62 | 0.80 | 30 | empty |
| 4 | 243 | 0.57 | 0.78 | 30 | empty |
| 5 | 69 | 0.57 | 0.88 | 16 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9VPD3
- Elsewhere: UniProt Q9VPD3 · AlphaFold DB Q9VPD3
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