MolNFT v1 · #319542 · protein
AlphaFold monomer V2.0 prediction for pts system mannitol-specific eiicba component (P00550)
P00550: “AlphaFold monomer V2.0 prediction for pts system mannitol-specific eiicba component (P00550)”. 9 pockets (best druggability 0.61). MolNFT v1 #319542 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P00550
- Type
- protein
- Length
- 637 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd1A2963012bEcbC7A8f505464439Ab678C48936f
- Molecule
- Pts system mannitol-specific eiicba component
- UniProt
- P00550
- Pockets
- 9 · best druggability 0.61
Structure
1 distinct chain · 62% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pts system mannitol-specific eiicba component | protein | 637 | 62% helix, 9% strand | P00550 |
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 322 | 0.61 | 0.78 | 40 | empty |
| 2 | 273 | 0.56 | 0.77 | 36 | empty |
| 3 | 82 | 0.54 | 0.85 | 19 | empty |
| 4 | 146 | 0.49 | 0.77 | 31 | empty |
| 5 | 127 | 0.49 | 0.79 | 22 | empty |
Compared structures
- 1A3A · Crystal structure of iia mannitol from escherichia COLI · an experimental structure of the same protein · chain A against C, TM-score 0.22
- 1A3A · Crystal structure of iia mannitol from escherichia COLI · an experimental structure of the same protein · chain A against C, TM-score 0.22
- 1J6T · Complex of enzyme iiamtl and the histidine-containing phosphocarrier protein hpr from… · an experimental structure of the same protein · chain A against A, TM-score 0.22
- 1J6T · Complex of enzyme iiamtl and the histidine-containing phosphocarrier protein hpr from… · an experimental structure of the same protein · chain A against A, TM-score 0.22
- 2FEW · Complex of enzyme iiamtl and phosphorylated enzyme iibmtl from escherichia COLI NMR… · an experimental structure of the same protein · chain A against A, TM-score 0.22
- 2FEW · Complex of enzyme IIAMTL and phosphorylated enzyme IIBMTL from Escherichia coli NMR… · an experimental structure of the same protein · chain A against A, TM-score 0.22
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00550
- Elsewhere: UniProt P00550 · AlphaFold DB P00550
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