MolNFT v1 · #319534 · protein
AlphaFold monomer V2.0 prediction for pectate trisaccharide-lyase (Q9WYR4)
Q9WYR4: “AlphaFold monomer V2.0 prediction for pectate trisaccharide-lyase (Q9WYR4)”. 2 pockets (best druggability 0.30). MolNFT v1 #319534 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q9WYR4
- Type
- protein
- Length
- 367 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xdf27c3fD9945ab234E04271Bf23AcF50Ec8f9f0E
- Molecule
- Pectate trisaccharide-lyase
- UniProt
- Q9WYR4
- Pockets
- 2 · best druggability 0.30
Structure
1 distinct chain · 11% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pectate trisaccharide-lyase | protein | 367 | 11% helix, 38% strand | Q9WYR4 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 56 | 0.30 | 0.75 | 17 | empty |
| 2 | 71 | 0.29 | 0.73 | 21 | empty |
Compared structures
- 3ZSC · Catalytic function and substrate recognition of the pectate lyase from Thermotoga maritima · an experimental structure of the same protein · chain A against A, TM-score 0.90
- 3ZSC · Catalytic function and substrate recognition of the pectate lyase from thermotoga maritima · an experimental structure of the same protein · chain A against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WYR4
- Elsewhere: UniProt Q9WYR4 · AlphaFold DB Q9WYR4
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