MolNFT v1 · #318335 · protein
AlphaFold monomer V2.0 prediction for pentatricopeptide repeat domain-containing protein 3, mitochondrial (Q2KI62)
Q2KI62: “AlphaFold monomer V2.0 prediction for pentatricopeptide repeat domain-containing protein 3, mitochondrial…”. 5 pockets (best druggability 0.54). MolNFT v1 #318335 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q2KI62
- Type
- protein
- Length
- 688 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x09b9a0286559821506f801b3701B147B167E38C3
- Molecule
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial
- UniProt
- Q2KI62
- Pockets
- 5 · best druggability 0.54
Structure
1 distinct chain · 58% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pentatricopeptide repeat domain-containing protein 3, mitochondrial | protein | 688 | 58% helix, 0% strand | Q2KI62 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 142 | 0.54 | 0.81 | 24 | empty |
| 2 | 267 | 0.51 | 0.74 | 31 | empty |
| 3 | 150 | 0.47 | 0.77 | 24 | empty |
| 4 | 190 | 0.47 | 0.75 | 25 | empty |
| 5 | 79 | 0.34 | 0.75 | 10 | empty |
Compared structures
- 6NEQ · Structure of human mitochondrial translation initiation factor 3 bound to the small… · an experimental structure of the same protein · chain A against o, TM-score 0.62
- 6NEQ · Structure of human mitochondrial translation initiation factor 3 bound to the small… · an experimental structure of the same protein · chain A against o, TM-score 0.62
- 6NF8 · Structure of human mitochondrial translation initiation factor 3 bound to the small… · an experimental structure of the same protein · chain A against o, TM-score 0.62
- 6NF8 · Structure of human mitochondrial translation initiation factor 3 bound to the small… · an experimental structure of the same protein · chain A against o, TM-score 0.62
- 3JD5 · Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome · an experimental structure of the same protein · chain A against o, TM-score 0.62
- 3JD5 · Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome · an experimental structure of the same protein · chain A against o, TM-score 0.62
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2KI62
- Elsewhere: UniProt Q2KI62 · AlphaFold DB Q2KI62
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