MolNFT v1 · #318024 · protein
AlphaFold monomer V2.0 prediction for pseudouridine-5'-phosphate glycosidase (P33025)
P33025: “AlphaFold monomer V2.0 prediction for pseudouridine-5'-phosphate glycosidase (P33025)”. 4 pockets (best druggability 0.68). MolNFT v1 #318024 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P33025
- Type
- protein
- Length
- 312 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x4d07E6a23DeB6B95bd9b90EcB67368b7e8D3B77e
- Molecule
- Pseudouridine-5'-phosphate glycosidase
- UniProt
- P33025
- Pockets
- 4 · best druggability 0.68
Structure
1 distinct chain · 50% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pseudouridine-5'-phosphate glycosidase | protein | 312 | 50% helix, 17% strand | P33025 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 213 | 0.68 | 0.86 | 34 | empty |
| 2 | 88 | 0.47 | 0.81 | 14 | empty |
| 3 | 63 | 0.36 | 0.78 | 21 | empty |
| 4 | 50 | 0.28 | 0.76 | 14 | empty |
Compared structures
- 4GIK · Crystal Structure of Pseudouridine Monophosphate Glycosidase/Linear R5P Adduct · an experimental structure of the same protein · chain A against B, TM-score 0.98
- 4GIK · Crystal structure of pseudouridine monophosphate GLYCOSIDASE/LINEAR R5P adduct · an experimental structure of the same protein · chain A against B, TM-score 0.98
- 4GIL · Crystal structure of pseudouridine monophosphate GLYCOSIDASE/LINEAR pseudouridine… · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 4GIL · Crystal Structure of Pseudouridine Monophosphate Glycosidase/Linear Pseudouridine… · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 4GIM · Crystal Structure of Pseudouridine Monophosphate Glycosidase Complexed with Pseudouridine… · an experimental structure of the same protein · chain A against B, TM-score 0.98
- 4GIM · Crystal structure of pseudouridine monophosphate glycosidase complexed with pseudouridine… · an experimental structure of the same protein · chain A against B, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P33025
- Elsewhere: UniProt P33025 · AlphaFold DB P33025
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