MolNFT v1 · #314025 · protein
AlphaFold monomer V2.0 prediction for photosystem II D2 protein (Q9TM47)
Q9TM47: “AlphaFold monomer V2.0 prediction for photosystem II D2 protein (Q9TM47)”. 4 pockets (best druggability 0.59). MolNFT v1 #314025 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q9TM47
- Type
- protein
- Length
- 351 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xfAaef252297e6E854581817f2DF5DFCA0526d067
- Molecule
- Photosystem II D2 protein
- UniProt
- Q9TM47
- Pockets
- 4 · best druggability 0.59
Structure
1 distinct chain · 64% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Photosystem II D2 protein | protein | 351 | 64% helix, 2% strand | Q9TM47 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 99 | 0.59 | 0.86 | 17 | empty |
| 2 | 116 | 0.48 | 0.80 | 22 | empty |
| 3 | 176 | 0.47 | 0.75 | 21 | empty |
| 4 | 117 | 0.38 | 0.73 | 22 | empty |
Compared structures
- 4YUU · Crystal structure of oxygen-evolving photosystem II from a red alga · an experimental structure of the same protein · chain A against D2, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9TM47
- Elsewhere: UniProt Q9TM47 · AlphaFold DB Q9TM47
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