MolNFT v1 · #313711 · protein
AlphaFold monomer V2.0 prediction for photosystem II protein D1 (Q06SD2)
Q06SD2: “AlphaFold monomer V2.0 prediction for photosystem II protein D1 (Q06SD2)”. 4 pockets (best druggability 0.66). MolNFT v1 #313711 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q06SD2
- Type
- protein
- Length
- 353 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xEa58c7534E5701aA8370E0fAEb19b7e14653e69c
- Molecule
- Photosystem II protein D1
- UniProt
- Q06SD2
- Pockets
- 4 · best druggability 0.66
Structure
1 distinct chain · 56% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Photosystem II protein D1 | protein | 353 | 56% helix, 3% strand | Q06SD2 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 78 | 0.66 | 0.92 | 18 | empty |
| 2 | 221 | 0.59 | 0.80 | 36 | empty |
| 3 | 235 | 0.52 | 0.77 | 36 | empty |
| 4 | 138 | 0.44 | 0.75 | 19 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q06SD2
- Elsewhere: UniProt Q06SD2 · AlphaFold DB Q06SD2
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