MolNFT v1 · #308004 · protein
AlphaFold monomer V2.0 prediction for probable zinc protease pqql (P31828)
P31828: “AlphaFold monomer V2.0 prediction for probable zinc protease pqql (P31828)”. 16 pockets (best druggability 0.68). MolNFT v1 #308004 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P31828
- Type
- protein
- Length
- 931 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x37B5dD4976fE9694fba3e257B1cFFdc5F5Ce91b6
- Molecule
- Probable zinc protease pqql
- UniProt
- P31828
- Pockets
- 16 · best druggability 0.68
Structure
1 distinct chain · 48% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable zinc protease pqql | protein | 931 | 48% helix, 20% strand | P31828 |
Pockets
16 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 565 | 0.68 | 0.78 | 56 | empty |
| 2 | 439 | 0.61 | 0.76 | 55 | empty |
| 3 | 455 | 0.60 | 0.75 | 36 | empty |
| 4 | 349 | 0.58 | 0.77 | 39 | empty |
| 5 | 189 | 0.53 | 0.78 | 29 | empty |
Compared structures
- 6OFS · The crystal structure of the periplasmic protease PqqL from Escherichia coli · an experimental structure of the same protein · chain A against A, TM-score 0.50
- 6OFS · The crystal structure of the periplasmic protease pqql from escherichia COLI · an experimental structure of the same protein · chain A against A, TM-score 0.50
- 6OFT · The crystal structure of the first half of the periplasmic protease pqql from escherichia… · an experimental structure of the same protein · chain A against B, TM-score 0.50
- 6OFT · The crystal structure of the first half of the periplasmic protease PqqL from Escherichia… · an experimental structure of the same protein · chain A against B, TM-score 0.50
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P31828
- Elsewhere: UniProt P31828 · AlphaFold DB P31828
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