MolNFT v1 · #306488 · protein
AlphaFold monomer V2.0 prediction for pyruvate, phosphate dikinase (P22983)
P22983: “AlphaFold monomer V2.0 prediction for pyruvate, phosphate dikinase (P22983)”. 8 pockets (best druggability 0.84). MolNFT v1 #306488 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P22983
- Type
- protein
- Length
- 874 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7782F4817b37743d738e9aF842bf74bd50f2015E
- Molecule
- Pyruvate, phosphate dikinase
- UniProt
- P22983
- Pockets
- 8 · best druggability 0.84
Structure
1 distinct chain · 51% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pyruvate, phosphate dikinase | protein | 874 | 51% helix, 18% strand | P22983 |
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 970 | 0.84 | 0.86 | 116 | empty |
| 2 | 321 | 0.64 | 0.80 | 43 | empty |
| 3 | 245 | 0.56 | 0.78 | 29 | empty |
| 4 | 109 | 0.54 | 0.83 | 24 | empty |
| 5 | 71 | 0.50 | 0.85 | 17 | empty |
Compared structures
- 1KBL · Pyruvate phosphate dikinase · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 1KBL · Pyruvate phosphate dikinase · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 1KC7 · Pyruvate phosphate dikinase with bound mg-phosphonopyruvate · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 1KC7 · Pyruvate Phosphate Dikinase with Bound Mg-phosphonopyruvate · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 1DIK · Pyruvate phosphate dikinase · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 1DIK · Pyruvate phosphate dikinase · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 1GGO · T453A mutant of pyruvate, phosphate dikinase · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 1GGO · T453A mutant of pyruvate, phosphate dikinase · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 2DIK · R337A mutant of pyruvate phosphate dikinase · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 2DIK · R337A mutant of pyruvate phosphate dikinase · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 1JDE · K22A mutant of pyruvate, phosphate dikinase · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 1JDE · K22A mutant of pyruvate, phosphate dikinase · an experimental structure of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P22983
- Elsewhere: UniProt P22983 · AlphaFold DB P22983
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