MolNFT v1 · #305061 · protein
AlphaFold monomer V2.0 prediction for retrovirus-related pol polyprotein from type-2 retrotransposable element R2DM (P16423)
P16423: “AlphaFold monomer V2.0 prediction for retrovirus-related pol polyprotein from type-2 retrotransposable…”. 17 pockets (best druggability 0.70). MolNFT v1 #305061 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P16423
- Type
- protein
- Length
- 1,057 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xc0F878C3f3E2a1874e2A6daC80d429e553DdB0D5
- Molecule
- Retrovirus-related pol polyprotein from type-2 retrotransposable element R2DM
- UniProt
- P16423
- Pockets
- 17 · best druggability 0.70
Structure
1 distinct chain · 49% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Retrovirus-related pol polyprotein from type-2 retrotransposable element R2DM | protein | 1057 | 49% helix, 12% strand | P16423 |
Pockets
17 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 52 | 0.70 | 0.98 | 19 | empty |
| 2 | 390 | 0.58 | 0.75 | 35 | empty |
| 3 | 211 | 0.53 | 0.77 | 19 | empty |
| 4 | 198 | 0.52 | 0.77 | 30 | empty |
| 5 | 56 | 0.51 | 0.87 | 17 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P16423
- Elsewhere: UniProt P16423 · AlphaFold DB P16423
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