MolNFT v1 · #301193 · protein
AlphaFold monomer V2.0 prediction for response regulator pled (Q9A5I5)
Q9A5I5: “AlphaFold monomer V2.0 prediction for response regulator pled (Q9A5I5)”. 3 pockets (best druggability 0.68). MolNFT v1 #301193 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q9A5I5
- Type
- protein
- Length
- 454 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xf87a97E0A4bB354D834857B14296240B167cbe70
- Molecule
- Response regulator pled
- UniProt
- Q9A5I5
- Pockets
- 3 · best druggability 0.68
Structure
1 distinct chain · 49% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Response regulator pled | protein | 454 | 49% helix, 19% strand | Q9A5I5 |
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 320 | 0.68 | 0.82 | 40 | empty |
| 2 | 220 | 0.58 | 0.80 | 30 | empty |
| 3 | 225 | 0.53 | 0.77 | 23 | empty |
Compared structures
- 2V0N · Activated response regulator pled in complex with C-digmp and GTP- alpha-S · an experimental structure of the same protein · chain A against B, TM-score 0.72
- 2V0N · Activated response regulator pled in complex with C-digmp and GTP- alpha-S · an experimental structure of the same protein · chain A against B, TM-score 0.72
- 2WB4 · Activated diguanylate cyclase pled in complex with C-di-gmp · an experimental structure of the same protein · chain A against B, TM-score 0.70
- 2WB4 · activated diguanylate cyclase PleD in complex with c-di-GMP · an experimental structure of the same protein · chain A against B, TM-score 0.70
- 1W25 · Response regulator PleD in complex with c-diGMP · an experimental structure of the same protein · chain A against A, TM-score 0.57
- 1W25 · Response regulator pled in complex with C-digmp · an experimental structure of the same protein · chain A against A, TM-score 0.57
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9A5I5
- Elsewhere: UniProt Q9A5I5 · AlphaFold DB Q9A5I5
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