MolNFT v1 · #298681 · protein
AlphaFold monomer V2.0 prediction for deoxyribodipyrimidine photo- lyase (P61497)
P61497 · Deoxyribodipyrimidine photo-lyase: “AlphaFold monomer V2.0 prediction for deoxyribodipyrimidine photo- lyase (P61497)”. 3 pockets (best druggability 0.82). MolNFT v1 #298681 on GenesisL1: 3D structure, binding sites and pockets in…
- Accession
- P61497
- Type
- protein
- Length
- 420 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9F605311B7e26e76340423EfAfbE5e2EFc7A0b7C
- Molecule
- Deoxyribodipyrimidine photo-lyase
- UniProt
- P61497
- Pockets
- 3 · best druggability 0.82
Structure
1 distinct chain · 53% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Deoxyribodipyrimidine photo-lyase | protein | 420 | 53% helix, 6% strand | P61497 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 480 | 0.82 | 0.89 | 42 | empty |
| 2 | 480 | 0.81 | 0.88 | 51 | empty |
| 3 | 112 | 0.38 | 0.74 | 25 | empty |
Compared structures
- 2J09 · Thermus DNA photolyase with FMN antenna chromophore · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 2J09 · Thermus DNA photolyase with FMN antenna chromophore · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 2J07 · Thermus DNA photolyase with 8-hdf antenna chromophore · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 2J07 · Thermus DNA photolyase with 8-HDF antenna chromophore · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 2J08 · Thermus DNA photolyase with 8-iod-riboflavin antenna chromophore · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 2J08 · Thermus DNA photolyase with 8-Iod-riboflavin antenna chromophore · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 1IQU · Crystal structure of photolyase-thymine complex · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 1IQU · Crystal structure of photolyase-thymine complex · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 1IQR · Crystal structure of DNA photolyase from Thermus thermophilus · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 1IQR · Crystal structure of DNA photolyase from thermus thermophilus · an experimental structure of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P61497
- Elsewhere: UniProt P61497 · AlphaFold DB P61497
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