MolNFT v1 · #296214 · protein

AlphaFold monomer V2.0 prediction for phosphoglycerate kinase 1 (P09411)

P09411: “AlphaFold monomer V2.0 prediction for phosphoglycerate kinase 1 (P09411)”. 3 pockets (best druggability 0.52). MolNFT v1 #296214 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: P09411
Type: protein
Length: 417 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xb6B6a8B1b9C758652293B6ae405d26F422203cef
Molecule: Phosphoglycerate kinase 1
UniProt: P09411
Pockets: 3 · best druggability 0.52

Structure

1 distinct chain · 41% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Phosphoglycerate kinase 1	protein	417	41% helix, 19% strand	P09411

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	237	0.52	0.76	36	empty
2	141	0.50	0.79	39	empty
3	89	0.39	0.77	15	empty

Compared structures

4O3F · Crystal Structure of mouse PGK1 3PG and terazosin(TZN) ternary complex · an experimental structure of the same protein · chain A against A, TM-score 0.94
4O3F · Crystal structure of mouse PGK1 3PG and TERAZOSIN(TZN) ternary complex · an experimental structure of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P09411
Elsewhere: UniProt P09411 · AlphaFold DB P09411

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