MolNFT v1 · #290965 · protein
AlphaFold monomer V2.0 prediction for PDZ and lim domain protein 5 (Q96HC4)
Q96HC4: “AlphaFold monomer V2.0 prediction for PDZ and lim domain protein 5 (Q96HC4)”. 5 pockets (best druggability 0.68). MolNFT v1 #290965 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q96HC4
- Type
- protein
- Length
- 596 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x6DAA77C4263E74E745cA9c4D8E291e57e8991Cf5
- Molecule
- PDZ and lim domain protein 5
- UniProt
- Q96HC4
- Pockets
- 5 · best druggability 0.68
Structure
1 distinct chain · 9% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | PDZ and lim domain protein 5 | protein | 596 | 9% helix, 16% strand | Q96HC4 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 605 | 0.68 | 0.77 | 39 | empty |
| 2 | 164 | 0.46 | 0.75 | 26 | empty |
| 3 | 63 | 0.32 | 0.75 | 11 | empty |
| 4 | 72 | 0.29 | 0.73 | 19 | empty |
| 5 | 58 | 0.29 | 0.75 | 12 | empty |
Compared structures
- 2DAR · Solution structure of first lim domain of enigma-like PDZ and lim domains protein · an experimental structure of the same protein · chain A against A, TM-score 0.11
- 2DAR · Solution structure of first LIM domain of Enigma-like PDZ and LIM domains protein · an experimental structure of the same protein · chain A against A, TM-score 0.11
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96HC4
- Elsewhere: UniProt Q96HC4 · AlphaFold DB Q96HC4
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