MolNFT v1 · #290738 · protein
AlphaFold monomer V2.0 prediction for probable cyclic di-gmp phosphodiesterase pdeb (P77473)
P77473: “AlphaFold monomer V2.0 prediction for probable cyclic di-gmp phosphodiesterase pdeb (P77473)”. 4 pockets (best druggability 0.70). MolNFT v1 #290738 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P77473
- Type
- protein
- Length
- 516 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd10960F956646DE8b64d3598984c91C2d5Af3D7b
- Molecule
- Probable cyclic di-gmp phosphodiesterase pdeb
- UniProt
- P77473
- Pockets
- 4 · best druggability 0.70
Structure
1 distinct chain · 48% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable cyclic di-gmp phosphodiesterase pdeb | protein | 516 | 48% helix, 22% strand | P77473 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 284 | 0.70 | 0.84 | 33 | empty |
| 2 | 342 | 0.60 | 0.78 | 41 | empty |
| 3 | 53 | 0.33 | 0.77 | 14 | empty |
| 4 | 64 | 0.32 | 0.76 | 13 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P77473
- Elsewhere: UniProt P77473 · AlphaFold DB P77473
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