MolNFT v1 · #289071 · protein
AlphaFold monomer V2.0 prediction for penicillin-binding protein a (P9WKD1)
P9WKD1: “AlphaFold monomer V2.0 prediction for penicillin-binding protein a (P9WKD1)”. 3 pockets (best druggability 0.65). MolNFT v1 #289071 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P9WKD1
- Type
- protein
- Length
- 491 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xB35df660264f41795De49C83276C108A4ba91ADE
- Molecule
- Penicillin-binding protein a
- UniProt
- P9WKD1
- Pockets
- 3 · best druggability 0.65
Structure
1 distinct chain · 41% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Penicillin-binding protein a | protein | 491 | 41% helix, 19% strand | P9WKD1 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 429 | 0.65 | 0.79 | 50 | empty |
| 2 | 120 | 0.43 | 0.77 | 25 | empty |
| 3 | 63 | 0.37 | 0.78 | 17 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P9WKD1
- Elsewhere: UniProt P9WKD1 · AlphaFold DB P9WKD1
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