MolNFT v1 · #289046 · protein
AlphaFold monomer V2.0 prediction for penicillin-binding protein 2B (P0A3M6)
P0A3M6: “AlphaFold monomer V2.0 prediction for penicillin-binding protein 2B (P0A3M6)”. 3 pockets (best druggability 0.65). MolNFT v1 #289046 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P0A3M6
- Type
- protein
- Length
- 680 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x01aC486776AfBeE367A940B4DEb7E3121eE9a882
- Molecule
- Penicillin-binding protein 2B
- UniProt
- P0A3M6
- Pockets
- 3 · best druggability 0.65
Structure
1 distinct chain · 39% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Penicillin-binding protein 2B | protein | 680 | 39% helix, 21% strand | P0A3M6 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 433 | 0.65 | 0.78 | 48 | empty |
| 2 | 267 | 0.57 | 0.78 | 38 | empty |
| 3 | 64 | 0.33 | 0.76 | 17 | empty |
Compared structures
- 2WAD · Penicillin-binding protein 2B (pbp-2B) from streptococcus pneumoniae (strain 5204) · an experimental structure of the same protein · chain A against B, TM-score 0.88
- 2WAD · Penicillin-binding protein 2B (pbp-2B) from streptococcus pneumoniae (strain 5204) · an experimental structure of the same protein · chain A against B, TM-score 0.88
- 2WAE · Penicillin-binding protein 2B (pbp-2B) from streptococcus pneumoniae (strain 5204) · an experimental structure of the same protein · chain A against A, TM-score 0.87
- 2WAE · Penicillin-binding protein 2B (pbp-2B) from streptococcus pneumoniae (strain 5204) · an experimental structure of the same protein · chain A against A, TM-score 0.87
- 2WAF · Penicillin-binding protein 2B (pbp-2B) from streptococcus pneumoniae (strain R6) · an experimental structure of the same protein · chain A against A, TM-score 0.76
- 2WAF · Penicillin-binding protein 2B (pbp-2B) from streptococcus pneumoniae (strain R6) · an experimental structure of the same protein · chain A against A, TM-score 0.76
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A3M6
- Elsewhere: UniProt P0A3M6 · AlphaFold DB P0A3M6
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