MolNFT v1 · #285850 · protein
AlphaFold monomer V2.0 prediction for pup--protein ligase (D2Q9D0)
D2Q9D0: “AlphaFold monomer V2.0 prediction for pup--protein ligase (D2Q9D0)”. 5 pockets (best druggability 0.69). MolNFT v1 #285850 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- D2Q9D0
- Type
- protein
- Length
- 488 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xEa58c7534E5701aA8370E0fAEb19b7e14653e69c
- Molecule
- Pup--protein ligase
- UniProt
- D2Q9D0
- Pockets
- 5 · best druggability 0.69
Structure
1 distinct chain · 45% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pup--protein ligase | protein | 488 | 45% helix, 17% strand | D2Q9D0 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 357 | 0.69 | 0.82 | 54 | empty |
| 2 | 263 | 0.58 | 0.79 | 30 | empty |
| 3 | 209 | 0.49 | 0.75 | 26 | empty |
| 4 | 141 | 0.44 | 0.76 | 34 | empty |
| 5 | 75 | 0.35 | 0.76 | 13 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D2Q9D0
- Elsewhere: UniProt D2Q9D0 · AlphaFold DB D2Q9D0
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