MolNFT v1 · #282035 · protein
AlphaFold monomer V2.0 prediction for rhodopsin (P79911)
P79911: “AlphaFold monomer V2.0 prediction for rhodopsin (P79911)”. 4 pockets (best druggability 0.82). MolNFT v1 #282035 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P79911
- Type
- protein
- Length
- 347 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x930eD3AC96Fe0Ec77247D9AE4C54Bd92C627474C
- Molecule
- Rhodopsin
- UniProt
- P79911
- Pockets
- 4 · best druggability 0.82
Structure
1 distinct chain · 70% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rhodopsin | protein | 347 | 70% helix, 3% strand | P79911 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 142 | 0.82 | 0.98 | 27 | empty |
| 2 | 140 | 0.41 | 0.74 | 24 | empty |
| 3 | 53 | 0.35 | 0.79 | 18 | empty |
| 4 | 58 | 0.32 | 0.75 | 10 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P79911
- Elsewhere: UniProt P79911 · AlphaFold DB P79911
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