MolNFT v1 · #282021 · protein
AlphaFold monomer V2.0 prediction for rhodopsin (O16020)
O16020: “AlphaFold monomer V2.0 prediction for rhodopsin (O16020)”. 3 pockets (best druggability 0.80). MolNFT v1 #282021 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- O16020
- Type
- protein
- Length
- 301 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x787c856c246D46194820F4350135EC4a88a6Ce76
- Molecule
- Rhodopsin
- UniProt
- O16020
- Pockets
- 3 · best druggability 0.80
Structure
1 distinct chain · 80% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rhodopsin | protein | 301 | 80% helix, 2% strand | O16020 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 116 | 0.80 | 0.98 | 28 | empty |
| 2 | 155 | 0.53 | 0.80 | 25 | empty |
| 3 | 61 | 0.34 | 0.76 | 14 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O16020
- Elsewhere: UniProt O16020 · AlphaFold DB O16020
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