MolNFT v1 · #281970 · protein

AlphaFold monomer V2.0 prediction for rhodopsin (O42328)

O42328: “AlphaFold monomer V2.0 prediction for rhodopsin (O42328)”. 3 pockets (best druggability 0.82). MolNFT v1 #281970 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: O42328
Type: protein
Length: 289 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x567c68955ce1Aa63461C127c6dDE626eDDdf8B9b
Molecule: Rhodopsin
UniProt: O42328
Pockets: 3 · best druggability 0.82

Structure

1 distinct chain · 78% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Rhodopsin	protein	289	78% helix, 3% strand	O42328

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	169	0.82	0.96	34	empty
2	171	0.47	0.76	22	empty
3	85	0.41	0.79	18	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O42328
Elsewhere: UniProt O42328 · AlphaFold DB O42328

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