MolNFT v1 · #278339 · protein

AlphaFold monomer V2.0 prediction for vacuolar V-snare NYV1 (Q12255)

Q12255: “AlphaFold monomer V2.0 prediction for vacuolar V-snare NYV1 (Q12255)”. 4 pockets (best druggability 0.47). MolNFT v1 #278339 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: Q12255
Type: protein
Length: 253 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xA985B6095a9a818c5b67148D3932856860A953Ef
Molecule: Vacuolar V-snare NYV1
UniProt: Q12255
Pockets: 4 · best druggability 0.47

Structure

1 distinct chain · 54% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Vacuolar V-snare NYV1	protein	253	54% helix, 13% strand	Q12255

Pockets

4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	202	0.47	0.74	20	empty
2	70	0.34	0.76	14	empty
3	63	0.29	0.73	9	empty
4	50	0.28	0.75	14	empty

Compared structures

2FZ0 · Identification of yeast R-SNARE Nyv1p as a novel longin domain protein · an experimental structure of the same protein · chain A against A, TM-score 0.52
2FZ0 · Identification of yeast R-snare NYV1P as a novel longin domain protein · an experimental structure of the same protein · chain A against A, TM-score 0.52

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q12255
Elsewhere: UniProt Q12255 · AlphaFold DB Q12255

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