MolNFT v1 · #274049 · protein
AlphaFold monomer V2.0 prediction for NAD-capped RNA hydrolase NUDT12 (Q9DCN1)
Q9DCN1: “AlphaFold monomer V2.0 prediction for NAD-capped RNA hydrolase NUDT12 (Q9DCN1)”. 6 pockets (best druggability 0.63). MolNFT v1 #274049 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q9DCN1
- Type
- protein
- Length
- 462 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xaa53776A41fB2e67da75A96E8a53746b6874aAB4
- Molecule
- NAD-capped RNA hydrolase NUDT12
- UniProt
- Q9DCN1
- Pockets
- 6 · best druggability 0.63
Structure
1 distinct chain · 36% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NAD-capped RNA hydrolase NUDT12 | protein | 462 | 36% helix, 21% strand | Q9DCN1 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 298 | 0.63 | 0.80 | 38 | empty |
| 2 | 305 | 0.62 | 0.78 | 31 | empty |
| 3 | 91 | 0.46 | 0.80 | 18 | empty |
| 4 | 125 | 0.45 | 0.78 | 21 | empty |
| 5 | 134 | 0.41 | 0.75 | 20 | empty |
Compared structures
- 6O3P · Crystal structure of the catalytic domain of mouse Nudt12 in complex with AMP and 3 Mg2+… · an experimental structure of the same protein · chain A against B, TM-score 0.69
- 6O3P · Crystal structure of the catalytic domain of mouse NUDT12 in complex with AMP and 3 MG2+… · an experimental structure of the same protein · chain A against B, TM-score 0.69
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9DCN1
- Elsewhere: UniProt Q9DCN1 · AlphaFold DB Q9DCN1
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