MolNFT v1 · #274029 · protein
AlphaFold monomer V2.0 prediction for thermonuclease (Q5HHM4)
Q5HHM4: “AlphaFold monomer V2.0 prediction for thermonuclease (Q5HHM4)”. 3 pockets (best druggability 0.39). MolNFT v1 #274029 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q5HHM4
- Type
- protein
- Length
- 228 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x01aC486776AfBeE367A940B4DEb7E3121eE9a882
- Molecule
- Thermonuclease
- UniProt
- Q5HHM4
- Pockets
- 3 · best druggability 0.39
Structure
1 distinct chain · 39% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thermonuclease | protein | 228 | 39% helix, 18% strand | Q5HHM4 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 79 | 0.39 | 0.78 | 18 | empty |
| 2 | 50 | 0.31 | 0.77 | 15 | empty |
| 3 | 50 | 0.27 | 0.74 | 12 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 9CIL · Crystal structure of Staphylococcal nuclease variant Delta+PHS T41V/S59A at cryogenic… · an experimental structure of the same protein · chain A against A, TM-score 0.56
- 9CIJ · Crystal structure of Staphylococcal nuclease variant Delta+PHS V23E/L36R at cryogenic… · an experimental structure of the same protein · chain A against A, TM-score 0.56
- 9CII · Crystal structure of Staphylococcal nuclease variant Delta+PHS V23D/L36R at cryogenic… · an experimental structure of the same protein · chain A against A, TM-score 0.56
- 9CU9 · Crystal structure of Staphylococcal nuclease variant Delta+PHS V23D/L36K at cryogenic… · an experimental structure of the same protein · chain A against A, TM-score 0.56
- 9CIK · Crystal structure of Staphylococcal nuclease variant Delta+PHS V23R/L36D at cryogenic… · an experimental structure of the same protein · chain A against A, TM-score 0.56
- 4WRD · Crystal structure of Staphylcoccal nulease variant Delta+PHS V66E L125E at cryogenic… · an experimental structure of the same protein · chain A against A, TM-score 0.56
- 4WRD · Crystal structure of staphylcoccal nulease variant DELTA+PHS V66E L125E at cryogenic… · an experimental structure of the same protein · chain A against A, TM-score 0.56
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5HHM4
- Elsewhere: UniProt Q5HHM4 · AlphaFold DB Q5HHM4
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