MolNFT v1 · #265954 · protein
AlphaFold monomer V2.0 prediction for neuroligin-3 (Q8BYM5)
Q8BYM5: “AlphaFold monomer V2.0 prediction for neuroligin-3 (Q8BYM5)”. 7 pockets (best druggability 0.71). MolNFT v1 #265954 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q8BYM5
- Type
- protein
- Length
- 825 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x6DAA77C4263E74E745cA9c4D8E291e57e8991Cf5
- Molecule
- Neuroligin-3
- UniProt
- Q8BYM5
- Pockets
- 7 · best druggability 0.71
Structure
1 distinct chain · 33% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Neuroligin-3 | protein | 825 | 33% helix, 9% strand | Q8BYM5 |
Pockets
7 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 61 | 0.71 | 0.97 | 17 | empty |
| 2 | 514 | 0.68 | 0.79 | 56 | empty |
| 3 | 370 | 0.65 | 0.80 | 41 | empty |
| 4 | 152 | 0.63 | 0.85 | 35 | empty |
| 5 | 321 | 0.60 | 0.77 | 25 | empty |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 7CEG · Crystal structure of the complex between mouse PTP delta and neuroligin-3 · an experimental structure of the same protein · chain A against B, TM-score 0.65
- 7CEG · Crystal structure of the complex between mouse ptp delta and neuroligin-3 · an experimental structure of the same protein · chain A against B, TM-score 0.65
- 7CEE · Crystal structure of mouse neuroligin-3 · an experimental structure of the same protein · chain A against A, TM-score 0.64
- 7CEE · Crystal structure of mouse neuroligin-3 · an experimental structure of the same protein · chain A against A, TM-score 0.64
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8BYM5
- Elsewhere: UniProt Q8BYM5 · AlphaFold DB Q8BYM5
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