MolNFT v1 · #265325 · protein
AlphaFold monomer V2.0 prediction for nickel-binding protein nika (Q2G2P5)
Q2G2P5: “AlphaFold monomer V2.0 prediction for nickel-binding protein nika (Q2G2P5)”. 5 pockets (best druggability 0.79). MolNFT v1 #265325 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q2G2P5
- Type
- protein
- Length
- 491 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x35612D34a32C306CA4fc1edA9360D1F717e25950
- Molecule
- Nickel-binding protein nika
- UniProt
- Q2G2P5
- Pockets
- 5 · best druggability 0.79
Structure
1 distinct chain · 26% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nickel-binding protein nika | protein | 491 | 26% helix, 25% strand | Q2G2P5 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 634 | 0.79 | 0.85 | 69 | empty |
| 2 | 86 | 0.56 | 0.87 | 25 | empty |
| 3 | 122 | 0.51 | 0.81 | 21 | empty |
| 4 | 179 | 0.47 | 0.76 | 20 | empty |
| 5 | 67 | 0.35 | 0.77 | 15 | empty |
Compared structures
- 3RQT · 1.5 Angstrom Crystal Structure of the Complex of Ligand Binding Component of ABC-type… · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 3RQT · 1.5 ångström crystal structure of the complex of ligand binding component of ABC-type… · an experimental structure of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2G2P5
- Elsewhere: UniProt Q2G2P5 · AlphaFold DB Q2G2P5
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