MolNFT v1 · #261460 · protein
AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase a (P15531)
P15531: “AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase a (P15531)”. 2 pockets (best druggability 0.49). MolNFT v1 #261460 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P15531
- Type
- protein
- Length
- 152 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x6Ed09D80e98fE15DE51C9E7a8896AbF1f2365C3e
- Molecule
- Nucleoside diphosphate kinase a
- UniProt
- P15531
- Pockets
- 2 · best druggability 0.49
Structure
1 distinct chain · 49% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoside diphosphate kinase a | protein | 152 | 49% helix, 16% strand | P15531 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 185 | 0.49 | 0.76 | 26 | empty |
| 2 | 51 | 0.32 | 0.77 | 17 | empty |
Compared structures
- 3L7U · Crystal structure of human NM23-H1 · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 3L7U · Crystal structure of human NM23-H1 · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 1UCN · X-ray structure of human nucleoside diphosphate kinase a complexed with ADP at 2 a… · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 1UCN · X-ray structure of human nucleoside diphosphate kinase A complexed with ADP at 2 A… · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 2HVE · S120G mutant of human nucleoside diphosphate kinase A complexed with ADP · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 2HVE · S120G mutant of human nucleoside diphosphate kinase a complexed with ADP · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 5UI4 · Structure of NME1 covalently conjugated to imidazole fluorosulfate · an experimental structure of the same protein · chain A against B, TM-score 0.98
- 2HVD · Human nucleoside diphosphate kinase A complexed with ADP · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 2HVD · Human nucleoside diphosphate kinase a complexed with ADP · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 1JXV · Crystal Structure of Human Nucleoside Diphosphate Kinase A · an experimental structure of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P15531
- Elsewhere: UniProt P15531 · AlphaFold DB P15531
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