MolNFT v1 · #261457 · protein
AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (P08879)
P08879: “AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (P08879)”. 2 pockets (best druggability 0.43). MolNFT v1 #261457 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P08879
- Type
- protein
- Length
- 153 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5BeA89782341f98147F2D811B063F91F0aE7D7bF
- Molecule
- Nucleoside diphosphate kinase
- UniProt
- P08879
- Pockets
- 2 · best druggability 0.43
Structure
1 distinct chain · 48% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoside diphosphate kinase | protein | 153 | 48% helix, 14% strand | P08879 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 157 | 0.43 | 0.75 | 28 | empty |
| 2 | 74 | 0.40 | 0.78 | 18 | empty |
Compared structures
- 3WX8 · Purification, characterization and structure of nucleoside diphosphate kinase from… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 3WX8 · Purification, characterization and structure of nucleoside diphosphate kinase from… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 1NSQ · Mechanism of phosphate transfer by nucleoside diphosphate kinase: X- ray structures of a… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 1NSQ · Mechanism of phosphate transfer by nucleoside diphosphate kinase: X-ray structures of a… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 1NDL · The awd nucleotide diphosphate kinase from drosophila · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 1NDL · The awd nucleotide diphosphate kinase from drosophila · an experimental structure of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08879
- Elsewhere: UniProt P08879 · AlphaFold DB P08879
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